Now Online: Full Single Cell Subtype Analysis Workflow

Today we published our first release of the FASTGenomics platform. You can now access our first prototype at https://www.fastgenomics.org. Choose one of eight recent data sets to explore the functionality. Right now, the prototype offers you a full pipeline for subtype discovery in single cell transcriptomics data.

• Among others, you will find tools for
• an interactive data quality assurance screen, including a simple tool for batch effect analysis
• t-SNE-embedding powered by deep neural networks
• clustering with HDBSCAN
• 3D-exploration of t-SNE-embedding for insights into clustering confidence
• differential gene expression with generalized linear models
• gene set enrichment analysis using GO
• comprehensive scientific summary of all methods and results

FASTGenomics is available as a free online tool now. Try it out now!